Wednesday, April 24, 2013

Ancient DNA reveals Europe's dynamic genetic history

Apr. 23, 2013 ? Ancient DNA recovered from a series of skeletons in central Germany up to 7,500 years old has been used to reconstruct the first detailed genetic history of modern Europe.

The study, published today in Nature Communications, reveals a dramatic series of events including major migrations from both Western Europe and Eurasia, and signs of an unexplained genetic turnover about 4,000 to 5,000 years ago.

The research was performed at the University of Adelaide's Australian Centre for Ancient DNA (ACAD). Researchers used DNA extracted from bone and teeth samples from prehistoric human skeletons to sequence a group of maternal genetic lineages that are now carried by up to 45% of Europeans.

The international team also included the University of Mainz in Germany and the National Geographic Society's Genographic Project.

"This is the first high-resolution genetic record of these lineages through time, and it is fascinating that we can directly observe both human DNA evolving in 'real-time', and the dramatic population changes that have taken place in Europe," says joint lead author Dr Wolfgang Haak of ACAD.

"We can follow over 4,000 years of prehistory, from the earliest farmers through the early Bronze Age to modern times."

"The record of this maternally inherited genetic group, called Haplogroup H, shows that the first farmers in Central Europe resulted from a wholesale cultural and genetic input via migration, beginning in Turkey and the Near East where farming originated and arriving in Germany around 7,500 years ago," says joint lead author Dr Paul Brotherton, formerly at ACAD and now at the University of Huddersfield, UK.

ACAD Director Professor Alan Cooper says: "What is intriguing is that the genetic markers of this first pan-European culture, which was clearly very successful, were then suddenly replaced around 4,500 years ago, and we don't know why. Something major happened, and the hunt is now on to find out what that was."

The team developed new advances in molecular biology to sequence entire mitochondrial genomes from the ancient skeletons. This is the first ancient population study using a large number of mitochondrial genomes.

"We have established that the genetic foundations for modern Europe were only established in the Mid-Neolithic, after this major genetic transition around 4,000 years ago," says Dr Haak. "This genetic diversity was then modified further by a series of incoming and expanding cultures from Iberia and Eastern Europe through the Late Neolithic."

"The expansion of the Bell Beaker culture (named after their pots) appears to have been a key event, emerging in Iberia around 2800 BC and arriving in Germany several centuries later," says Dr Brotherton. "This is a very interesting group as they have been linked to the expansion of Celtic languages along the Atlantic coast and into central Europe."

"These well-dated ancient genetic sequences provide a unique opportunity to investigate the demographic history of Europe," says Professor Cooper.

"We can not only estimate population sizes but also accurately determine the evolutionary rate of the sequences, providing a far more accurate timescale of significant events in recent human evolution."

The team has been working closely on the genetic prehistory of Europeans for the past 7-8 years.

Professor Kurt Alt (University of Mainz) says: "This work shows the power of archaeology and ancient DNA working together to reconstruct human evolutionary history through time. We are currently expanding this approach to other transects across Europe."

Genographic Project director Spencer Wells says: "Studies such as this on ancient remains serve as a valuable adjunct to the work we are doing with modern populations in the Genographic Project. While the DNA of people alive today can reveal the end result of their ancestors' ancient movements, to really understand the dynamics of how modern genetic patterns were created we need to study ancient material as well."

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Story Source:

The above story is reprinted from materials provided by University of Adelaide.

Note: Materials may be edited for content and length. For further information, please contact the source cited above.


Journal Reference:

  1. Paul Brotherton, Wolfgang Haak, Jennifer Templeton, Guido Brandt, Julien Soubrier, Christina Jane Adler, Stephen M. Richards, Clio Der Sarkissian, Robert Ganslmeier, Susanne Friederich, Veit Dresely, Mannis van Oven, Rosalie Kenyon, Mark B. Van der Hoek, Jonas Korlach, Khai Luong, Simon Y.W. Ho, Lluis Quintana-Murci, Doron M. Behar, Harald Meller, Kurt W. Alt, Alan Cooper, Syama Adhikarla, Arun Kumar Ganesh Prasad, Ramasamy Pitchappan, Arun Varatharajan Santhakumari, Elena Balanovska, Oleg Balanovsky, Jaume Bertranpetit, David Comas, Bego?a Mart?nez-Cruz, Marta Mel?, Andrew C. Clarke, Elizabeth A. Matisoo-Smith, Matthew C. Dulik, Jill B. Gaieski, Amanda C. Owings, Theodore G. Schurr, Miguel G. Vilar, Angela Hobbs, Himla Soodyall, Asif Javed, Laxmi Parida, Daniel E. Platt, Ajay K. Royyuru, Li Jin, Shilin Li, Matthew E. Kaplan, Nirav C. Merchant, R John Mitchell, Colin Renfrew, Daniela R. Lacerda, Fabr?cio R Santos, David F. Soria Hernanz, R Spencer Wells, Pandikumar Swamikrishnan, Chris Tyler-Smith, Pedro Paulo Vieira, Janet S. Ziegle. Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nature Communications, 2013; 4: 1764 DOI: 10.1038/ncomms2656

Note: If no author is given, the source is cited instead.

Disclaimer: Views expressed in this article do not necessarily reflect those of ScienceDaily or its staff.

Source: http://feeds.sciencedaily.com/~r/sciencedaily/top_news/top_science/~3/w9mrM1bOOEA/130423134037.htm

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Selfridges to get Blackberry Q10 ahead of official UK launch, available this Friday for ?580

Selfridges gets exclusive threeday UK Blackberry Q10 window, grab it for 580 starting this Friday

The keyboard lover's BlackBerry is on its way, and the first place to sell it will be none other than our old favorite, Selfridges. The UK department store will carry a black version of the Blackberry Q10 exclusively between April 26th and April 28th, according to a tweet from Blackberry UK, well before other retailers. You can pre-order it now for £580 (at the source) or, if you'd like to meet other people who also love keyboards, grab one at the store starting Friday.

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Via: Pocket Lint

Source: Selfridges

Source: http://feeds.engadget.com/~r/weblogsinc/engadget/~3/vCcqkJFbJfM/

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This Radeon HD 7990 Promises to Spit Out any Game in 4K

AMD has released the specs of its latest monster graphics card, the Radeon HD 7990. It not for the casual gamer, sure—but by the sounds of things, if you're minded to buy one it will tear through your games with some fairly insane processing power. More »
    


Source: http://feeds.gawker.com/~r/gizmodo/full/~3/l7Ecg6SqQb4/this-radeon-hd-7990-promises-to-spit-out-any-game-in-4k

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Floorplans for iPad review: Design beautiful details floor plans

Floorplans is a powerful iPad app that lets you create floor plans on the go. It features an easy-to-use and intuitive interface that allows you draw walls, add furniture, and more.

Creating a floor plan is a breeze: simply draw the walls with your finger and add furniture with a tap of a button. You can also make detailed adjustments to item you add to your floor plan including dimensions, finishes, and flipping horizontally and vertically. This is awesome for people who are using Floorplans to help redecorate their home.

As you work on your floor plan, you can zoom in and see great detail. All the measurements will also be automatically calculated and added to the floor plan.

In addition to furniture and structural item, Floorplans lets you add labels, name rooms, and add flooring to individual rooms. Unfortunately, if you have an open-concept design, simply designate "entry ways" to split up rooms with different flooring. Though, if your entry ways aren't between walls, you're out of luck and can't separate the rooms. This is difficult for open-concept kitchens since you can't have an entry way between wall and counter.

In addition to creating new floor plans from scratch, you can also import and covert PDF and JPG files into Floorplans to be edited and manipulated with the app. It will also calibrate the dimensions of imported floor plans.

The good

  • Import existing files from PDF or JPG, including sketches
  • Calibrate dimensions of imported floor plans
  • Create new floor plans from scratch
  • Draw angled and curved walls
  • Add furniture and structural elements
  • Edit dimensions of items
  • Export as PDF, JPG, and Floorplans native format
  • AirPrint support
  • iCloud sync
  • Dropbox support

The bad

  • Not enough items (no bathroom counter with two sinks, for example)
  • Entry ways must be placed between walls.
  • Can't specify which items are on top when stacking items

The bottom line

I go through phases of obsession with HGTV, and that's what prompted me to download Floorplans. I've had a blast designing my dream home with it and can see how professional designers would find Floorplans to be a valuable asset.

    


Source: http://feedproxy.google.com/~r/TheIphoneBlog/~3/ANLNucFeCHY/story01.htm

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Australian police arrest senior member of LulzSec hacking group

By Jane Wardell

SYDNEY (Reuters) - Australian Federal Police have arrested the self-proclaimed leader of the international hacking group LulzSec, the collective that claimed responsibility for infiltrating and shutting down the CIA website.

Police said the 24-year-old IT worker, who held a position of trust at an international company, was arrested in Sydney on Tuesday evening and charged with hacking offences that carry a maximum penalty of 10 years.

Glen McEwen, manager of cyber crime operations at Australian Federal Police, said the man was detained at work, where he had access to sensitive information from clients including government agencies.

LulzSec, an offshoot of the international hacking group Anonymous, has taken credit for hacking attacks on government and private sector websites, including the Central Intelligence Agency (CIA), Sony Pictures, a unit of Sony Corp, 20th Century Fox and Nintendo.

Anonymous - and LulzSec in particular - became notorious in late 2010 when they launched what they called the "first cyber war" in retaliation for attempts to shut down the Wikileaks website.

The name LulzSec is a combination of "lulz", another way of writing "lols" or "laugh out loud", and security.

Australian police said the unnamed Australian man, who used the online moniker "Aush0k", was known to international law authorities.

His arrest comes a week after an American member of LulzSec, Cody Kretsinger, was sentenced in a Los Angeles court to a year in prison followed by home detention. Kretsinger, who used the online handle "Recursion", pleaded guilty in a plea agreement with prosecutors.

Court documents in that case revealed that Anonymous leader "Sabu", whose real name is Hector Xavier Monsegur, had provided the FBI with information on fellow hackers after pleading guilty to hacking offences.

The Australian hacker has been charged with two counts of unauthorized modification of data to cause impairment and one count of unauthorized access to a restricted data system after a government website was attacked earlier this month.

"Let me make it extremely clear to everybody out there, this is not harmless fun, this is serious," McEwen said at a press conference.

McEwen said the man posted in online forums frequented by other members of LulzSec that he was the group's leader.

"There were no denials of his claims of being the leader," McEwen told reporters.

The man has been granted bail and will appear before a court next month.

LulzSec allegedly broke into Australian government department and university websites in 2011. Anonymous last year took around 10 Australian government websites offline, protesting plans to force ISPs to store more user data and make it available to security services.

(Additional reporting by Michael Sin; Editing by Paul Tait and Jeremy Laurence)

Source: http://news.yahoo.com/australian-police-arrest-senior-member-lulzsec-hacking-group-012243724--finance.html

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IAG has enough investor support to gain control of Vueling

April 22 (Reuters) - Pep Guardiola is not the only connection between Bayern Munich and Barcelona, who meet in their Champions League semi-final, first leg at the Allianz Arena on Tuesday. Both teams are dominating their leagues to an almost embarrassing extent, have won the Champions League four times apiece, share an acrimonious rivalry with Real Madrid, and owe part of their success to the flamboyant Dutchman Louis van Gaal. Both have also been in two Champions League finals in the last four years, though the Catalans won both of theirs and the Bavarians came out losers on each occasion. ...

Source: http://news.yahoo.com/iag-enough-investor-support-gain-control-vueling-094713580--finance.html

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Precision agriculture improves farming efficiency, has important implications on food security

Apr. 23, 2013 ? Precision agriculture promises to make farming more efficient and should have an important impact on the serious issue of food security, according to a new study published in Significance, the magazine of the Royal Statistical Society and the American Statistical Association. In an article about the study in the magazine's May issue, University of Reading Professor Margaret A. Oliver, BSc, PhD, assesses how there is potential to manage land more effectively to improve the farming economy and crop quality, and to ensure food security.

Spatial variation is at the core of precision agriculture and geostatistics.. All aspects of the environment - soil, rocks, weather, vegetation, water, etc. - vary from place to place over the Earth. The soil, landform, drainage, and so on all affect crop growth, and these factors generally vary within agricultural fields. Farmers have always been aware of this situation, but have not been able to measure and map it in a quantitative way.

Measurement is now possible with the tools provided by geostatistics, which describes how properties vary within fields. This information is then used to predict values at places where there is no information for eventual mapping.

Geostatistics can also be used to design sampling of the soil and crops to determine what the soil needs to improve crop growth, in terms of crop nutrients, lime and irrigation, for example. This sample information is used for geostatistical prediction and mapping. Such maps can then be used by farmers for decision-making. Examples include where to apply lime in a field, where more water or drainage is needed, and what amounts of nutrients are required in different parts of a field. Precision agriculture will reduce the amount of fertilizers and pesticides used by applying inputs only where they are needed and in appropriate quantities.

"Precision agriculture will aid efforts to improve food security and also crop quality," Professor Oliver notes in the article. "It will also have a major effect on reducing adverse effects on the environment from agriculture."

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Story Source:

The above story is reprinted from materials provided by Wiley, via AlphaGalileo.

Note: Materials may be edited for content and length. For further information, please contact the source cited above.


Journal Reference:

  1. Oliver. Precision Agriculture and Geostatistics: How to Manage Agriculture More Exactly. Significance, 2013 DOI: 10.1111/j.1740-9713.2013.00646.x

Note: If no author is given, the source is cited instead.

Disclaimer: Views expressed in this article do not necessarily reflect those of ScienceDaily or its staff.

Source: http://feeds.sciencedaily.com/~r/sciencedaily/computers_math/information_technology/~3/J8qB8H0wHvU/130423110747.htm

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